paul i can already help regarding the ABS,it wont be affected at all.... its system is all standalone from the engine ecu,so that will work fine.
You will need to keep the current mk3 ecu wired in and powered up to the body side of the harness so your clocks still work,that was a major obstacle with nigella's swap as we didnt have a stock ecu to work with.Then you can send the audi engine signals,oil pressure,coolant temp etc to the mk3 ecu and it will work.
Dont worry about width,you have loads of that,as long as theres enough from front pulley to driveshaft exit point you are laughing.